STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1729Hypothetical protein. (218 aa)    
Predicted Functional Partners:
LBA1730
Hypothetical protein; COG0058 Glucan phosphorylase.
      0.963
epsE
Phospho-glucosyltransferase; EpsE.
  
  
 0.845
LBA1726
UDPgalactopyranose mutase; Potential frameshift to 1725; UDP-galactopyranose mutase.
  
  
 0.844
LBA1728
Glycosyl transferase.
  
  
 0.823
LBA1731
COG1216 Predicted glycosyltransferases.
  
  
 0.811
epsF
Glycosyltransferase.
  
  
 0.795
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.709
LBA1727
Polysaccharide polymerase.
       0.708
epsJ
COG0562 UDP-galactopyranose mutase.
  
  
 0.696
epsI
Oligosaccharide repeat unit transporter.
  
  
 0.694
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.