Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LBA1817COG1794 Aspartate racemase; Belongs to the aspartate/glutamate racemases family. (249 aa)    
Predicted Functional Partners:
asnH
Asn synthetase; COG0367 Asparagine synthase (glutamine-hydrolyzing).
 
  
 0.974
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysine ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily.
 
   
 0.957
pyrB
Aspartate carbamoyltransferase; PyrB; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
 0.915
ansA
L-asparaginase.
    
 0.910
LBA1695
Aspartate aminotransferase.
    
  0.902
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.900
asnA
Aspartate-ammonia ligase; COG2502 Asparagine synthetase A.
     
  0.900
LBA0159
Hypothetical protein; COG3919 Predicted ATP-grasp enzyme.
 
     0.862
LBA0850
COG0527 Aspartokinases; Belongs to the aspartokinase family.
     
  0.800
LBA1215
Aspartokinase; ThrA2; COG0527 Aspartokinases; Belongs to the aspartokinase family.
     
  0.800
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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