STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1820COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (228 aa)    
Predicted Functional Partners:
LBA1819
Two-component sensor histidine kinase homolog; VanS.
 
 0.989
lisK
Two-component sensor histidine kinase.
 
 0.917
LBA0747
Histidine kinase.
 
 0.910
LBA1660
Sensor protein.
 
 0.886
LBA0079
Putative histidine kinase; VicK.
 
 0.884
ribC
Riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family.
 
   
 0.882
LBA1909
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.810
LBA1430
Putative histidine protein kinase.
 
 
 0.794
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysine ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily.
     
 0.770
LBA1817
COG1794 Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
  
    0.753
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.