STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1823Hypothetical protein. (260 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.863
LBA1825
Hypothetical protein.
       0.790
parB
Chromosome partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
       0.790
parA
Chromosome partitioning protein.
       0.790
parB-2
Chromosome partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
       0.790
gidB
Glucose inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.790
LBA0270
Hypothetical protein; COG0517 FOG CBS domain putative.
 
     0.751
LBA1180
Hypothetical protein.
  
     0.724
yycH
Hypothetical protein.
  
     0.718
dnaB-2
Chromosome replication initiation; DnaB.
  
     0.666
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.