STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1834Putative oxidoreductase; COG0431 Predicted protein. (179 aa)    
Predicted Functional Partners:
LBA1833
Putative oxidoreductase; COG0431 Predicted protein.
 
  
 
0.981
LBA1656
Hypothetical protein.
    0.967
LBA0062
Hypothetical protein.
     0.918
ribC
Riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family.
    
 0.912
LBA0064
Fumarate reductase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
    
 0.908
LBA0908
Fumarate reductase flavoprotein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
    
 0.904
apbE
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.799
LBA1832
COG2365 protein tyrosine-serine phosphatase.
       0.570
LBA1835
Transcriptional regulator.
  
  
 0.505
LBA0644
Hypothetical protein.
  
    0.467
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.