STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1883Probable NLP-P60 family secreted protein. (160 aa)    
Predicted Functional Partners:
LBA0542
Putative heavy-metal-transporting ATPase; Potential frameshift to 541; COG2608 Copper chaperone.
     
 0.759
LBA1220
Pyridine mercuric reductase; COG1249 Pyruvate-2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
     
 0.759
LBA1140
Lysin; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
     
 0.730
cadA
Cadmium-transporting ATPase; Potential frameshift to 542; CadA; COG2217 Cation transport ATPase.
     
 0.704
lysA-2
Lysin; LysA; putative lysin.
     
 0.694
LBA0176
N-acetylmuramidase.
    
 0.682
LBA0177
Autolysin, amidase.
  
  
 0.553
LBA1884
Predicted permease.
       0.481
LBA1885
Predicted permease.
       0.481
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.