STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxRThioredoxin reductase. (310 aa)    
Predicted Functional Partners:
LBA0422
Thioredoxin reductase; Belongs to the thioredoxin family.
  
 
 0.904
trxB
TrxB; COG0492 Thioredoxin reductase.
  
  
 
0.902
LBA1899
Putative transcriptional regulator; Family; ArsR; COG0607 Rhodanese-related sulfurtransferase.
 
  
 0.900
pfoR
Putative regulatory protein; PfoR.
     
 0.834
citD
Citrate lyase gamma chain; Covalent carrier of the coenzyme of citrate lyase.
      
 0.810
citE
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
      
 0.810
citF
Citrate lyase, alpha chain.
      
 0.810
frnE
Protein-disulfide isomerase; FrnE.
  
  
 0.798
LBA1901
Thioredoxin 2.
  
 
 0.727
LBA1793
Hypothetical protein.
  
 
 0.676
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.