STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1913ABC transporter ATPase protein. (233 aa)    
Predicted Functional Partners:
LBA1914
ABC transporter permease protein.
 
 
 0.988
LBA1585
ABC transporter ATP-binding protein.
  
0.916
LBA1783
ABC transporter ATP-binding protein.
    
0.909
LBA1674
Amino acid ABC transporter permease protein.
 
  
 0.804
oppC
Permease protein (oligopeptide ABC transporter); OppC.
 
 
  
 0.796
LBA1939
ABC transporter ATP binding protein.
 
 
0.708
LBA1915
Hypothetical protein.
       0.702
LBA1679
ABC transporter permease protein.
 
 
 0.674
LBA1839
Putative ABC transporter permease protein.
  
 
 0.673
oppC-2
Oligopeptide ABC transporter permease protein; OppC.
 
 
  
 0.579
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.