STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1917Polysaccharide biosynthesis family protein. (538 aa)    
Predicted Functional Partners:
oppC-2
Oligopeptide ABC transporter permease protein; OppC.
     
 0.752
LBA1187
Hypothetical protein.
  
     0.635
LBA1566
Bacteriocin helveticin J.
  
     0.620
LBA1186
Hypothetical protein.
  
     0.602
LBA0791
16s pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.
  
    0.583
lysA-2
Lysin; LysA; putative lysin.
 
     0.583
LBA1512
PrtP precursor; Cell envelope-associated protein PrtR; Belongs to the peptidase S8 family.
  
     0.545
LBA1681
Hypothetical protein.
 
     0.515
LBA1184
Hypothetical protein.
  
     0.501
bfrA
Fructosidase; BfrA.
      
 0.475
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.