STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1937Hypothetical protein. (217 aa)    
Predicted Functional Partners:
LBA1939
ABC transporter ATP binding protein.
  
    0.597
LBA0824
Hypothetical protein; COG0457 FOG TPR repeat.
 
     0.576
LBA1938
Hypothetical protein.
       0.569
LBA1351
Lysin; Potential frameshift to 1352.
 
 
   0.557
LBA1509
Penicillin-binding protein.
 
     0.540
tetR
COG1309 transcriptional regulator, TetR family.
 
     0.532
LBA1181
Hypothetical protein.
  
     0.524
dnaB-2
Chromosome replication initiation; DnaB.
  
     0.514
LBA0167
Hypothetical protein.
  
     0.506
LBA0611
COG0778 Nitroreductase.
 
  
 0.504
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.