STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpg0226Multidrug efflux protein, outer membrane component. (465 aa)    
Predicted Functional Partners:
lpg0225
RND efflux membrane fusion protein.
 
  0.973
lpg0224
Toxin secretion ABC transporter HlyB/MsbA family ATP-binding protein.
 
 
  0.959
lpg0221
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.756
lpg0986
Membrane protein.
  
     0.734
lpg0223
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.730
lpg0988
Hypothetical protein.
  
     0.720
lpg0991
Exported membrane protein.
  
     0.720
lpg1000
Putative exported protein.
  
     0.719
lpg0989
Type IV secretory protein VirB4 components.
  
    0.715
lpg0865
Conserved gene, previously annotated as cytochrome c type biogenesis protein CcmH in Legionella pneumophila, perhaps by artifactual extension of previous protein.
  
     0.709
Your Current Organism:
Legionella pneumophila Philadelphia
NCBI taxonomy Id: 272624
Other names: L. pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia-1, Legionella pneumophila subsp. pneumophila strain Philadelphia 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.