Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
lpg0272 | lpg0273 | lpg0272 | lpg0273 | Cysteine transferase. | Major facilitator superfamily transporter. | 0.773 |
lpg0272 | lpg0274 | lpg0272 | lpg0274 | Cysteine transferase. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.548 |
lpg0272 | lpg0466 | lpg0272 | lpg0466 | Cysteine transferase. | Oxaloacetate decarboxylase alpha subunit. | 0.689 |
lpg0272 | lpg0947 | lpg0272 | lpg0947 | Cysteine transferase. | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | 0.703 |
lpg0272 | lpg1212 | lpg0272 | lpg1212 | Cysteine transferase. | IAA acetyltransferase/MarR transcriptional regulatory protein; Conserved gene, may be fused protein. | 0.674 |
lpg0272 | lpg2536 | lpg0272 | lpg2536 | Cysteine transferase. | Ferredoxin reductase. | 0.710 |
lpg0272 | nuoD | lpg0272 | lpg2786 | Cysteine transferase. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.613 |
lpg0272 | nuoI | lpg0272 | lpg2781 | Cysteine transferase. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.743 |
lpg0272 | pksJ | lpg0272 | lpg2186 | Cysteine transferase. | Polyketide synthase, type I. | 0.753 |
lpg0272 | sdhC | lpg0272 | lpg0528 | Cysteine transferase. | Succinate dehydrogenase cytochrome b556 subunit C. | 0.629 |
lpg0273 | lpg0272 | lpg0273 | lpg0272 | Major facilitator superfamily transporter. | Cysteine transferase. | 0.773 |
lpg0273 | lpg0274 | lpg0273 | lpg0274 | Major facilitator superfamily transporter. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.548 |
lpg0274 | lpg0272 | lpg0274 | lpg0272 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Cysteine transferase. | 0.548 |
lpg0274 | lpg0273 | lpg0274 | lpg0273 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Major facilitator superfamily transporter. | 0.548 |
lpg0466 | lpg0272 | lpg0466 | lpg0272 | Oxaloacetate decarboxylase alpha subunit. | Cysteine transferase. | 0.689 |
lpg0466 | lpg0947 | lpg0466 | lpg0947 | Oxaloacetate decarboxylase alpha subunit. | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | 0.810 |
lpg0466 | lpg2536 | lpg0466 | lpg2536 | Oxaloacetate decarboxylase alpha subunit. | Ferredoxin reductase. | 0.707 |
lpg0466 | nuoI | lpg0466 | lpg2781 | Oxaloacetate decarboxylase alpha subunit. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.700 |
lpg0466 | pksJ | lpg0466 | lpg2186 | Oxaloacetate decarboxylase alpha subunit. | Polyketide synthase, type I. | 0.835 |
lpg0466 | sdhC | lpg0466 | lpg0528 | Oxaloacetate decarboxylase alpha subunit. | Succinate dehydrogenase cytochrome b556 subunit C. | 0.779 |
page 1 of 4