STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpg0645Hypothetical protein; Conserved gene, may be truncated RtxA. (681 aa)    
Predicted Functional Partners:
lpg1515
Toxin secretion ATP binding protein.
 
  
 0.870
lpg1517
HlyD family secretion protein.
 
  
 0.851
lpg1516
ABC transporter, ATP binding/permease fusion protein.
 
  
 0.798
lpg2019
Serine metalloprotease; Belongs to the peptidase S8 family.
  
 
 0.761
lpg0644
Hypothetical protein.
 
 0.756
lpg0764
Hypothetical protein.
  
 
 0.742
tolC
Agglutination protein.
 
  
 0.725
lpg2523
Hypothetical protein.
   
   0.723
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
 0.697
lpg0828
Periplasmic protein.
 
   
 0.687
Your Current Organism:
Legionella pneumophila Philadelphia
NCBI taxonomy Id: 272624
Other names: L. pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia-1, Legionella pneumophila subsp. pneumophila strain Philadelphia 1
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