Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cdd | cpxA | lpg1435 | lpg1437 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Sensor histidine kinase CpxA. | 0.404 |
cdd | cpxR | lpg1435 | lpg1438 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Transcriptional regulatory protein CpxR. | 0.404 |
cdd | deoC | lpg1435 | lpg1433 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | 0.982 |
cdd | lpg1431 | lpg1435 | lpg1431 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Hypothetical protein. | 0.519 |
cdd | lpg1432 | lpg1435 | lpg1432 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | FAD linked oxidase. | 0.670 |
cdd | lpg1436 | lpg1435 | lpg1436 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Hypothetical protein. | 0.693 |
cdd | lpg1439 | lpg1435 | lpg1439 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Mg2+ and Co2+ transporter CorC. | 0.424 |
cdd | lpg1441 | lpg1435 | lpg1441 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-inducible protein PhoH. | 0.694 |
cdd | xapA | lpg1435 | lpg1434 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Xanthosine phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.982 |
cdd | ybeY | lpg1435 | lpg1440 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Metal dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.602 |
cpxA | cdd | lpg1437 | lpg1435 | Sensor histidine kinase CpxA. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.404 |
cpxA | cpxR | lpg1437 | lpg1438 | Sensor histidine kinase CpxA. | Transcriptional regulatory protein CpxR. | 0.976 |
cpxA | lpg1436 | lpg1437 | lpg1436 | Sensor histidine kinase CpxA. | Hypothetical protein. | 0.468 |
cpxA | lpg1439 | lpg1437 | lpg1439 | Sensor histidine kinase CpxA. | Mg2+ and Co2+ transporter CorC. | 0.773 |
cpxA | lpg1441 | lpg1437 | lpg1441 | Sensor histidine kinase CpxA. | Phosphate starvation-inducible protein PhoH. | 0.817 |
cpxA | ybeY | lpg1437 | lpg1440 | Sensor histidine kinase CpxA. | Metal dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.773 |
cpxR | cdd | lpg1438 | lpg1435 | Transcriptional regulatory protein CpxR. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.404 |
cpxR | cpxA | lpg1438 | lpg1437 | Transcriptional regulatory protein CpxR. | Sensor histidine kinase CpxA. | 0.976 |
cpxR | deoC | lpg1438 | lpg1433 | Transcriptional regulatory protein CpxR. | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | 0.414 |
cpxR | lpg1436 | lpg1438 | lpg1436 | Transcriptional regulatory protein CpxR. | Hypothetical protein. | 0.481 |
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