STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpg1671Alpha-amylase, putative. (709 aa)    
Predicted Functional Partners:
lpg0026
Amino acid permease.
    
  0.636
lpg0049
Amino acid transporter, permease.
    
  0.636
lpg0228
Amino acid permease family protein.
    
  0.636
lpg0281
Amino acid transporter.
    
  0.636
lpg0404
Amino acid antiporter.
    
  0.636
lpg1658
Amino acid antiporter.
    
  0.636
lpg1691
Amino acid antiporter.
    
  0.636
lpg1917
Amino acid antiporter.
    
  0.636
lpg2388
Amino acid permease.
    
  0.636
lpg1670
Hypothetical protein.
    
  0.600
Your Current Organism:
Legionella pneumophila Philadelphia
NCBI taxonomy Id: 272624
Other names: L. pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia-1, Legionella pneumophila subsp. pneumophila strain Philadelphia 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.