Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lpg1671Alpha-amylase, putative. (709 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase, type I.
    
 0.659
lpg1670
Hypothetical protein.
   
   0.585
lpg0428
Glyoxylase domain hypothetical protein.
  
    0.541
lpg2179
Peptide synthetase, non-ribosomal.
     
 0.532
sidB
SidB; Conserved gene, Rtx-like.
  
     0.492
lpg0026
Amino acid permease.
    
  0.402
lpg0049
Amino acid transporter, permease.
    
  0.402
lpg0228
Amino acid permease family protein.
    
  0.402
lpg0281
Amino acid transporter.
    
  0.402
lpg0404
Amino acid antiporter.
    
  0.402
Your Current Organism:
Legionella pneumophila Philadelphia
NCBI taxonomy Id: 272624
Other names: L. pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia-1, Legionella pneumophila subsp. pneumophila strain Philadelphia 1
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