Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lpg1900Transglutaminase domain protein. (662 aa)    
Predicted Functional Partners:
lpg1899
Transmembrane protein.
 
  
 0.978
lpg1898
Methanol dehydrogenase regulatory protein.
 
   
 0.954
pilP
Type IV pilus biogenesis protein PilP.
  
     0.738
pilN
Type IV pilus biogenesis protein PilN.
  
     0.733
lpg2596
Signal peptide protein, LysM domain protein.
  
     0.727
pilO
Type IV pilus biogenesis protein PilO.
  
     0.719
pilM
Type IV pilus biogenesis protein PilM.
  
     0.707
pilZ
Type 4 fimbrial biogenesis protein PilZ.
  
     0.702
pilE3
Type IV pilin.
  
     0.690
pilQ
Type IV pilus biogenesis protein PilQ.
  
     0.633
Your Current Organism:
Legionella pneumophila Philadelphia
NCBI taxonomy Id: 272624
Other names: L. pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia-1, Legionella pneumophila subsp. pneumophila strain Philadelphia 1
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