Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| csrA | lpg2089 | lpg2094 | lpg2089 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Putative conjugative transfer protein TraB. | 0.759 |
| csrA | lpg2090 | lpg2094 | lpg2090 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Putative conjugative transfer protein TraK. | 0.756 |
| csrA | lpg2091 | lpg2094 | lpg2091 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Putative conjugative transfer protein TraE. | 0.756 |
| csrA | lpg2092 | lpg2094 | lpg2092 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Hypothetical sex pilus assembly protein-like. | 0.756 |
| csrA | lpg2093 | lpg2094 | lpg2093 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Hypothetical fimbrial protein precursor-like. | 0.756 |
| csrA | traC | lpg2094 | lpg2087 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | TraC. | 0.734 |
| csrA | traU | lpg2094 | lpg2085 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | TraU. | 0.408 |
| csrA | traV | lpg2094 | lpg2088 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Conjugative transfer: assembly. | 0.735 |
| lpg2089 | csrA | lpg2089 | lpg2094 | Putative conjugative transfer protein TraB. | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.759 |
| lpg2089 | lpg2090 | lpg2089 | lpg2090 | Putative conjugative transfer protein TraB. | Putative conjugative transfer protein TraK. | 0.800 |
| lpg2089 | lpg2091 | lpg2089 | lpg2091 | Putative conjugative transfer protein TraB. | Putative conjugative transfer protein TraE. | 0.952 |
| lpg2089 | lpg2092 | lpg2089 | lpg2092 | Putative conjugative transfer protein TraB. | Hypothetical sex pilus assembly protein-like. | 0.800 |
| lpg2089 | lpg2093 | lpg2089 | lpg2093 | Putative conjugative transfer protein TraB. | Hypothetical fimbrial protein precursor-like. | 0.786 |
| lpg2089 | traC | lpg2089 | lpg2087 | Putative conjugative transfer protein TraB. | TraC. | 0.948 |
| lpg2089 | traG | lpg2089 | lpg2079 | Putative conjugative transfer protein TraB. | TraG. | 0.872 |
| lpg2089 | traH | lpg2089 | lpg2080 | Putative conjugative transfer protein TraB. | TraH. | 0.872 |
| lpg2089 | traU | lpg2089 | lpg2085 | Putative conjugative transfer protein TraB. | TraU. | 0.873 |
| lpg2089 | traV | lpg2089 | lpg2088 | Putative conjugative transfer protein TraB. | Conjugative transfer: assembly. | 0.781 |
| lpg2090 | csrA | lpg2090 | lpg2094 | Putative conjugative transfer protein TraK. | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.756 |
| lpg2090 | lpg2089 | lpg2090 | lpg2089 | Putative conjugative transfer protein TraK. | Putative conjugative transfer protein TraB. | 0.800 |
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