STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpg2091Putative conjugative transfer protein TraE. (187 aa)    
Predicted Functional Partners:
lpg2089
Putative conjugative transfer protein TraB.
 
     0.952
traC
TraC.
 
     0.944
traH
TraH.
 
   
 0.877
traG
TraG.
 
     0.872
traF-2
Pilus assembly protein TraF.
 
     0.872
traN
TraN.
 
     0.872
lpg2084
Putative conjugative transfer protein TrbC.
 
     0.872
traU
TraU.
 
     0.870
lpg2086
TraW.
 
     0.861
traF
Sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins.
 
     0.855
Your Current Organism:
Legionella pneumophila Philadelphia
NCBI taxonomy Id: 272624
Other names: L. pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Legionella pneumophila subsp. pneumophila str. Philadelphia-1, Legionella pneumophila subsp. pneumophila strain Philadelphia 1
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