STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin0182Lin0182 protein; Similar to oligopeptide ABC transport system substrate-binding proteins. (524 aa)    
Predicted Functional Partners:
lin0294
Lin0294 protein; Similar to transporter.
 
 0.998
lin0183
Lin0183 protein; Similar to oligopeptide ABC transporter, permease protein.
 0.996
lin0184
Lin0184 protein; Similar to oligopeptide ABC transporter, permease protein.
 0.994
nifJ
NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase.
  
  
 0.976
lin0190
Lin0190 protein; Similar to oligopeptide ABC transporter-binding protein.
 
 
0.942
lin2714
Lin2714 protein; Similar to dipeptide ABC transporter (dipeptide-binding protein).
 
 
0.938
lin2299
Lin2299 protein; Similar to oligopeptide ABC transporter (permease).
 
 0.898
lin2297
Lin2297 protein; Similar to oligopeptide ABC transporter (ATP-binding protein).
 
  
 0.897
lin2298
Lin2298 protein; Similar to oligopeptide ABC transporter (permease).
 
 0.887
lin2296
Lin2296 protein; Similar to oligopeptide ABC transporter (ATP-binding protein).
 
  
 0.851
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.