STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin0642Lin0642 protein; Similar to a transcription regulator (surface protein PAg negative regulator par). (177 aa)    
Predicted Functional Partners:
lin0643
Lin0643 protein; Similar to oxidoreductase.
       0.598
lin0636
Peptidoglycan bound protein (LPXTG motif) similar to adhesin.
 
     0.534
lin0663
Lin0663 protein; Similar to transcription regulator (Rgg type).
  
     0.504
lin2055
Similar to unknown proteins.
  
     0.480
lin0041
Putative AgrB-like protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family.
  
     0.468
lin2541
Lin2541 protein; Similar to transcription regulator.
  
     0.453
lin0350
Lin0350 protein; Similar to transcriptional regulators.
  
     0.438
lin0641
Lin0641 protein; Weakly similar to methyltransferase.
       0.427
lin2975
Lin2975 protein.
  
     0.424
lin0354
Lin0354 protein; Similar to internalin, putative peptidoglycan bound protein (LPXTG motif).
  
     0.413
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.