STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin1205Lin1205 protein. (452 aa)    
Predicted Functional Partners:
lin0213
Lin0213 protein.
  
    0.766
lin0636
Peptidoglycan bound protein (LPXTG motif) similar to adhesin.
  
    0.717
lin0457
Putative peptidoglycan bound protein (LPXTG motif).
  
     0.695
lin0619
Similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif).
  
    0.675
lin0352
Lin0352 protein; Similar to cell surface proteins (LPXTG motif).
  
    0.667
lin0514
Similar to internalin protein, putative peptidoglycan bound protein (LPXTG motif).
  
    0.661
lin0141
Putative peptidoglycan bound protein (LPXTG motif).
  
     0.653
lin2975
Lin2975 protein.
  
     0.649
lin0296
Lin0296 protein.
  
     0.642
lin0036
Similar to arginine deiminase.
   
    0.633
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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