STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin1584UPF0758 protein lin1584; Similar to DNA repair protein RadC; Belongs to the UPF0758 family. (224 aa)    
Predicted Functional Partners:
comC
ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).
     
 0.828
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.744
comFC
ComFC protein; Similar to late competence protein comFC.
  
    0.675
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.651
folC
FolC protein; Similar to Folyl-polyglutamate synthetase; Belongs to the folylpolyglutamate synthase family.
  
  
 0.646
mutS
DNA mismatch repair (recognition); This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.623
lin1313
Lin1313 protein; Similar to polypeptide deformylase, similar to B. subtilis Smf protein.
  
  
 0.593
comEC
ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding.
  
  
 0.591
recN
DNA repair and genetic recombination; May be involved in recombinational repair of damaged DNA.
  
   
 0.560
mreB
MreB protein; Similar to cell-shape determining protein MreB.
  
  
 0.554
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.