STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin1643Similar to unknown proteins. (151 aa)    
Predicted Functional Partners:
lin1642
Lin1642 protein; Similar to general stress protein.
 
  
 0.957
lin2295
Regulatory protein Spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily.
 
    0.806
lin2320
Lin2320 protein.
 
  
 0.763
lin2820
Lin2820 protein.
  
    0.745
lin1636
Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
     0.741
lin2317
Lin2317 protein; Similar to ABC transporter (membrane protein).
  
     0.737
lin1649
UPF0354 protein lin1649; Similar to unknown proteins; Belongs to the UPF0354 family.
 
     0.734
lin0318
Lin0318 protein; Similar to B. subtilis YycI protein.
  
     0.728
lin2332
Lin2332 protein; Similar to arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
    0.728
lin1027
UPF0356 protein lin1027; Similar to B. subtilis YkzG protein; Belongs to the UPF0356 family.
  
     0.716
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.