STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin2413Lin2413 protein; Highly similar to putative recombinase [Bacteriophage A118]. (271 aa)    
Predicted Functional Partners:
lin2414
Gp47 [Bacteriophage A118].
 
  
 0.957
lin0084
Lin0084 protein; Highly similar to gp47 [Bacteriophage A118].
 
  
 0.819
lin2412
Lin2412 protein; Highly similar to gp49 [Bacteriophage A118].
 
    0.789
lin2411
Lin2411 protein.
       0.723
lin1267
Lin1267 protein; Similar to a B. subtilis PBSX phage protein.
 
     0.704
lin0099
Similar to phage protein.
 
     0.684
lin2410
Lin2410 protein; Similar to phage related proteins.
       0.672
lin2409
Similar to intrgase proteins; Belongs to the 'phage' integrase family.
       0.667
lin1266
Similar to phage protein.
  
     0.664
lin2400
Lin2400 protein; Similar to Lactococcus lactis prophage pi3 protein 45.
 
     0.661
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
Server load: low (16%) [HD]