STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin2587Lin2587 protein; Similar to bacteriophage protein. (757 aa)    
Predicted Functional Partners:
lin2588
Lin2588 protein; Similar to bacteriophage protein.
 
     0.928
lin2589
Lin2589 protein; Similar to DEAH-family helicase.
 
     0.876
lin2590
Lin2590 protein; Similar to bacteriophage protein.
 
     0.872
lin2586
Lin2586 protein; Similar to bacteriophage protein.
 
     0.814
lin2591
Lin2591 protein; Similar to bacteriophage protein.
 
     0.658
lin2579
Lin2579 protein; Similar to terminase [bacteriophage bIL285].
 
     0.596
lin2383
Lin2383 protein; Similar to hypothetical protein [Lactobacillus casei bacteriophage A2].
  
     0.540
lin2585
Lin2585 protein.
 
     0.501
lin0543
Similar to tagatose-1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
  
     0.460
lin2581
Lin2581 protein; Similar to bacteriophage protein.
 
    0.447
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.