lin0431 protein (Listeria innocua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lin0431

Lin0431 protein. (140 aa)

Predicted Functional Partners:

lin2789

0.886

lin0430

0.794

lin2786

0.793

lin2785

0.763

lin2787

0.759

lin2790

0.711

lin2784

0.706

lin0589

0.637

lin0588

0.633

lin0429

0.623

Your Current Organism:

Listeria innocua

NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lin0429	lin0430	gene:17564756	gene:17564757	Lin0429 protein; Similar to B. subtilis YyaH protein.	Lin0430 protein.	0.583
lin0429	lin0431	gene:17564756	gene:17564758	Lin0429 protein; Similar to B. subtilis YyaH protein.	Lin0431 protein.	0.623
lin0430	lin0429	gene:17564757	gene:17564756	Lin0430 protein.	Lin0429 protein; Similar to B. subtilis YyaH protein.	0.583
lin0430	lin0431	gene:17564757	gene:17564758	Lin0430 protein.	Lin0431 protein.	0.794
lin0431	lin0429	gene:17564758	gene:17564756	Lin0431 protein.	Lin0429 protein; Similar to B. subtilis YyaH protein.	0.623
lin0431	lin0430	gene:17564758	gene:17564757	Lin0431 protein.	Lin0430 protein.	0.794
lin0431	lin0588	gene:17564758	gene:17564914	Lin0431 protein.	Lin0588 protein.	0.633
lin0431	lin0589	gene:17564758	gene:17564915	Lin0431 protein.	Lin0589 protein; Weakly similar to carboxylesterase.	0.637
lin0431	lin2784	gene:17564758	gene:17567171	Lin0431 protein.	Lin2784 protein; Weakly similar to E. coli MenA protein.	0.706
lin0431	lin2785	gene:17564758	gene:17567172	Lin0431 protein.	FAD:protein FMN transferase; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.763
lin0431	lin2786	gene:17564758	gene:17567173	Lin0431 protein.	Conserved lipoprotein.	0.793
lin0431	lin2787	gene:17564758	gene:17567174	Lin0431 protein.	Lin2787 protein; Similar to NADH dehydrogenase.	0.759
lin0431	lin2789	gene:17564758	gene:17567176	Lin0431 protein.	Lin2789 protein.	0.886
lin0431	lin2790	gene:17564758	gene:17567177	Lin0431 protein.	Lin2790 protein; Similar to heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.	0.711
lin0588	lin0431	gene:17564914	gene:17564758	Lin0588 protein.	Lin0431 protein.	0.633
lin0588	lin0589	gene:17564914	gene:17564915	Lin0588 protein.	Lin0589 protein; Weakly similar to carboxylesterase.	0.895
lin0589	lin0431	gene:17564915	gene:17564758	Lin0589 protein; Weakly similar to carboxylesterase.	Lin0431 protein.	0.637
lin0589	lin0588	gene:17564915	gene:17564914	Lin0589 protein; Weakly similar to carboxylesterase.	Lin0588 protein.	0.895
lin2784	lin0431	gene:17567171	gene:17564758	Lin2784 protein; Weakly similar to E. coli MenA protein.	Lin0431 protein.	0.706
lin2784	lin2785	gene:17567171	gene:17567172	Lin2784 protein; Weakly similar to E. coli MenA protein.	FAD:protein FMN transferase; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.889