Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apt | flaA | gene:17565890 | gene:17565025 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.426 |
| apt | lin0682 | gene:17565890 | gene:17565009 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | 0.714 |
| flaA | apt | gene:17565025 | gene:17565890 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.426 |
| flaA | gyrA | gene:17565025 | gene:17564318 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.467 |
| flaA | lin0682 | gene:17565025 | gene:17565009 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | 0.508 |
| flaA | lin0696 | gene:17565025 | gene:17565023 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lin0696 protein. | 0.633 |
| gyrA | flaA | gene:17564318 | gene:17565025 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.467 |
| gyrA | lin0682 | gene:17564318 | gene:17565009 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | 0.426 |
| gyrA | pyrP | gene:17564318 | gene:17566311 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | PyrP protein; Highly similar to uracil permease. | 0.426 |
| lin0531 | lin0682 | gene:17564857 | gene:17565009 | Transmembrane protein. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | 0.412 |
| lin0681 | lin0682 | gene:17565008 | gene:17565009 | Lin0681 protein. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | 0.757 |
| lin0682 | apt | gene:17565009 | gene:17565890 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.714 |
| lin0682 | flaA | gene:17565009 | gene:17565025 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.508 |
| lin0682 | gyrA | gene:17565009 | gene:17564318 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.426 |
| lin0682 | lin0531 | gene:17565009 | gene:17564857 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | Transmembrane protein. | 0.412 |
| lin0682 | lin0681 | gene:17565009 | gene:17565008 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | Lin0681 protein. | 0.757 |
| lin0682 | lin0696 | gene:17565009 | gene:17565023 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | Lin0696 protein. | 0.896 |
| lin0682 | lin1333 | gene:17565009 | gene:17565664 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.571 |
| lin0682 | lin2059 | gene:17565009 | gene:17566417 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | Riboflavin transporter; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. | 0.438 |
| lin0682 | pcrA | gene:17565009 | gene:17566226 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius. Binds directly to gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism (Probable). | ATP-dependent DNA helicase. | 0.470 |
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