STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin0898Protein SprT-like; Similar to B. subtilis YdcK protein; Belongs to the SprT family. (155 aa)    
Predicted Functional Partners:
lin0897
Lin0897 protein.
  
  
 0.845
lin2157
Weakly similar to proteases.
 
     0.671
lin0207
Initiation-control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.611
lin2317
Lin2317 protein; Similar to ABC transporter (membrane protein).
  
     0.597
lin0896
Similar to transport proteins.
       0.583
lin2003
UPF0398 protein lin2003; Similar to conserved hypothetical proteins; Belongs to the UPF0398 family.
  
     0.559
lin2036
Similar to unknown proteins.
  
     0.514
lin0927
Lin0927 protein; Hypothetical transmembrane protein; Belongs to the LTA synthase family.
  
    0.512
rsbW
sigma-B activity negative regulator RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
     
 0.487
lin0205
Lin0205 protein; Similar to B. subtilis DNA polymerase III (delta' subunit).
  
     0.482
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.