Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dnaB | lin1043 | gene:17565927 | gene:17565373 | Chromosome replication initiation / membrane attachment protein DnaB. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.459 |
| dnaB | lin1344 | gene:17565927 | gene:17565675 | Chromosome replication initiation / membrane attachment protein DnaB. | UPF0154 protein lin1344; Highly similar to B. subtilis YneF protein. | 0.727 |
| dnaB | lin1617 | gene:17565927 | gene:17565948 | Chromosome replication initiation / membrane attachment protein DnaB. | Lin1617 protein; Weakly similar to site specific DNA-methyltransferase. | 0.599 |
| dnaB | lin1636 | gene:17565927 | gene:17565967 | Chromosome replication initiation / membrane attachment protein DnaB. | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.749 |
| dnaB | lin1795 | gene:17565927 | gene:17566150 | Chromosome replication initiation / membrane attachment protein DnaB. | UPF0374 protein lin1795; Similar to hypothetical proteins; Belongs to the UPF0374 family. | 0.442 |
| dnaB | lin1869 | gene:17565927 | gene:17566224 | Chromosome replication initiation / membrane attachment protein DnaB. | Lin1869 protein. | 0.801 |
| dnaB | lin2002 | gene:17565927 | gene:17566360 | Chromosome replication initiation / membrane attachment protein DnaB. | Cell cycle protein GpsB; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.726 |
| dnaB | lin2154 | gene:17565927 | gene:17566512 | Chromosome replication initiation / membrane attachment protein DnaB. | Similar to unknown proteins. | 0.793 |
| dnaB | recU | gene:17565927 | gene:17566363 | Chromosome replication initiation / membrane attachment protein DnaB. | Holliday junction resolvase RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation (By similarity). Belongs to the RecU family. | 0.618 |
| lin1043 | dnaB | gene:17565373 | gene:17565927 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Chromosome replication initiation / membrane attachment protein DnaB. | 0.459 |
| lin1043 | lin1344 | gene:17565373 | gene:17565675 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | UPF0154 protein lin1344; Highly similar to B. subtilis YneF protein. | 0.729 |
| lin1043 | lin1617 | gene:17565373 | gene:17565948 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Lin1617 protein; Weakly similar to site specific DNA-methyltransferase. | 0.538 |
| lin1043 | lin1636 | gene:17565373 | gene:17565967 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.541 |
| lin1043 | lin2002 | gene:17565373 | gene:17566360 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Cell cycle protein GpsB; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.557 |
| lin1043 | lin2154 | gene:17565373 | gene:17566512 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Similar to unknown proteins. | 0.542 |
| lin1043 | recU | gene:17565373 | gene:17566363 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Holliday junction resolvase RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation (By similarity). Belongs to the RecU family. | 0.545 |
| lin1344 | dnaB | gene:17565675 | gene:17565927 | UPF0154 protein lin1344; Highly similar to B. subtilis YneF protein. | Chromosome replication initiation / membrane attachment protein DnaB. | 0.727 |
| lin1344 | lin1043 | gene:17565675 | gene:17565373 | UPF0154 protein lin1344; Highly similar to B. subtilis YneF protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.729 |
| lin1344 | lin1617 | gene:17565675 | gene:17565948 | UPF0154 protein lin1344; Highly similar to B. subtilis YneF protein. | Lin1617 protein; Weakly similar to site specific DNA-methyltransferase. | 0.692 |
| lin1344 | lin1636 | gene:17565675 | gene:17565967 | UPF0154 protein lin1344; Highly similar to B. subtilis YneF protein. | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.729 |
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