Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BfmBAB | PdhB | gene:17565741 | gene:17565375 | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | 0.523 |
BfmBAB | lin1569 | gene:17565741 | gene:17565900 | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. | 0.915 |
BfmBAB | lin1775 | gene:17565741 | gene:17566106 | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | Lin1775 protein; Similar to L-lactate dehydrogenases; Belongs to the LDH/MDH superfamily. | 0.915 |
BfmBAB | nifJ | gene:17565741 | gene:17565151 | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.503 |
BfmBAB | pflB | gene:17565741 | gene:17565774 | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | Pyruvate formate-lyase. | 0.930 |
BfmBAB | pykA | gene:17565741 | gene:17565936 | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | Highly similar to pyruvate kinases. | 0.477 |
PdhB | BfmBAB | gene:17565375 | gene:17565741 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | BfmBAB protein; Similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit). | 0.523 |
PdhB | lin0730 | gene:17565375 | gene:17565057 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Lin0730 protein; Similar to pyruvate oxidase; Belongs to the TPP enzyme family. | 0.914 |
PdhB | lin1569 | gene:17565375 | gene:17565900 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. | 0.915 |
PdhB | lin1775 | gene:17565375 | gene:17566106 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Lin1775 protein; Similar to L-lactate dehydrogenases; Belongs to the LDH/MDH superfamily. | 0.915 |
PdhB | lin2029 | gene:17565375 | gene:17566387 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Lin2029 protein; Similar to malolactic enzyme (malate dehydrogenase). | 0.924 |
PdhB | nifJ | gene:17565375 | gene:17565151 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.948 |
PdhB | pflB | gene:17565375 | gene:17565774 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Pyruvate formate-lyase. | 0.955 |
PdhB | pycA | gene:17565375 | gene:17565390 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.922 |
PdhB | pykA | gene:17565375 | gene:17565936 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Highly similar to pyruvate kinases. | 0.945 |
aspB | lin1569 | gene:17566369 | gene:17565900 | Aminotransferase; Similar to aspartate aminotransferases. | L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. | 0.916 |
aspB | lin1775 | gene:17566369 | gene:17566106 | Aminotransferase; Similar to aspartate aminotransferases. | Lin1775 protein; Similar to L-lactate dehydrogenases; Belongs to the LDH/MDH superfamily. | 0.916 |
aspB | nifJ | gene:17566369 | gene:17565151 | Aminotransferase; Similar to aspartate aminotransferases. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.537 |
aspB | pycA | gene:17566369 | gene:17565390 | Aminotransferase; Similar to aspartate aminotransferases. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.822 |
lin0730 | PdhB | gene:17565057 | gene:17565375 | Lin0730 protein; Similar to pyruvate oxidase; Belongs to the TPP enzyme family. | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | 0.914 |
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