STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin2456Carbohydrate deacetylase 2; Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides. (248 aa)    
Predicted Functional Partners:
lin2458
Lin2458 protein; Similar to PTS system, cellobiose-specific enzyme IIB component.
 
   
 0.796
lin2457
Lin2457 protein; Similar to PTS system, cellobiose-specific enzyme IIA component.
 
   
 0.795
lin2454
Lin2454 protein; Similar to 6-phospho-beta-glucosidase.
 
  
 0.791
lin2455
Lin2455 protein; Similar to transcription antiterminator BglG family.
 
     0.783
lin2459
Permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
     
 0.723
lin0540
Lin0540 protein; Similar to 6-phospho-beta-glucosidase.
 
  
 0.536
lin0526
Lin0526 protein; Similar to 6-phospho-beta-glucosidase.
 
  
 0.513
lin2453
Lin2453 protein.
       0.454
lin2460
Transmembrane protein.
       0.438
lin2452
Similar to N-acetylglucosamine-6-phosphate isomerase.
       0.407
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.