STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCC_00107TRAP dicarboxylate transporter DctM subunit unknown substrate 6. (470 aa)    
Predicted Functional Partners:
CCC_02471
TRAP dicarboxylate transporter DctQ subunit unknown substrate 6.
 
 
 0.929
CCC_02473
TRAP transporter solute receptor unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
 0.911
CCC_02589
TRAP-type transport system periplasmic component predicted N-acetylneuraminate-binding protein.
 
  
  0.836
CCC_00667
TRAP dicarboxylate transporter DctM subunit unknown substrate 4.
 
  
 
0.802
CCC_00088
TRAP-type C4-dicarboxylate transport system periplasmic component.
 
  
  0.794
CCC_03435
TRAP transporter solute receptor unknown substrate 3.
 
  
  0.777
CCC_00106
Hypothetical protein.
       0.773
CCC_03433
TRAP dicarboxylate transporter DctM subunit unknown substrate 3.
  
  
 
0.705
CCC_00105
Hypothetical protein.
       0.682
CCC_00090
TRAP transporter 4TM/12TM fusion protein unknown substrate 1.
  
  
  0.666
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.