Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCC_00545Hypothetical protein. (363 aa)    
Predicted Functional Partners:
CCC_01276
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
     0.773
CCC_01778
Serine/threonine protein kinase.
  
     0.768
CCC_03399
Protein export cytoplasm protein SecA ATPase RNA helicase.
  
     0.765
CCC_01777
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligase.
  
     0.764
CCC_01983
Alanyl-tRNA synthetase.
  
     0.764
CCC_03400
Protein export cytoplasm protein SecA ATPase RNA helicase.
  
     0.763
CCC_00322
Hypothetical protein.
  
     0.758
CCC_00903
Porin 41 (Por41) precursor.
  
     0.753
CCC_02257
Hypothetical protein.
  
     0.742
CCC_01068
DnaJ-class molecular chaperone.
  
     0.741
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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