Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CCC_00469 | CCC_01488 | CCC_00469 | CCC_01488 | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Cysteine desulfurase SufS subfamily. | 0.727 |
CCC_00469 | CCC_04167 | CCC_00469 | CCC_04167 | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Cysteine desulfurase. | 0.727 |
CCC_01487 | CCC_01488 | CCC_01487 | CCC_01488 | Magnetosome protein MamF. | Cysteine desulfurase SufS subfamily. | 0.773 |
CCC_01487 | CCC_01489 | CCC_01487 | CCC_01489 | Magnetosome protein MamF. | Major membrane protein I. | 0.773 |
CCC_01488 | CCC_00469 | CCC_01488 | CCC_00469 | Cysteine desulfurase SufS subfamily. | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.727 |
CCC_01488 | CCC_01487 | CCC_01488 | CCC_01487 | Cysteine desulfurase SufS subfamily. | Magnetosome protein MamF. | 0.773 |
CCC_01488 | CCC_01489 | CCC_01488 | CCC_01489 | Cysteine desulfurase SufS subfamily. | Major membrane protein I. | 0.918 |
CCC_01488 | CCC_02922 | CCC_01488 | CCC_02922 | Cysteine desulfurase SufS subfamily. | Cysteine desulfurase. | 0.797 |
CCC_01488 | CCC_02924 | CCC_01488 | CCC_02924 | Cysteine desulfurase SufS subfamily. | Iron-sulfur cluster assembly scaffold protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.940 |
CCC_01488 | CCC_03008 | CCC_01488 | CCC_03008 | Cysteine desulfurase SufS subfamily. | Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ. | 0.930 |
CCC_01488 | CCC_03991 | CCC_01488 | CCC_03991 | Cysteine desulfurase SufS subfamily. | Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ. | 0.930 |
CCC_01488 | CCC_04166 | CCC_01488 | CCC_04166 | Cysteine desulfurase SufS subfamily. | Iron-sulfur cluster assembly scaffold protein IscU. | 0.973 |
CCC_01488 | CCC_04167 | CCC_01488 | CCC_04167 | Cysteine desulfurase SufS subfamily. | Cysteine desulfurase. | 0.858 |
CCC_01488 | iscS | CCC_01488 | CCC_02923 | Cysteine desulfurase SufS subfamily. | Cysteine desulfurase IscS subfamily; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.797 |
CCC_01489 | CCC_01487 | CCC_01489 | CCC_01487 | Major membrane protein I. | Magnetosome protein MamF. | 0.773 |
CCC_01489 | CCC_01488 | CCC_01489 | CCC_01488 | Major membrane protein I. | Cysteine desulfurase SufS subfamily. | 0.918 |
CCC_02922 | CCC_01488 | CCC_02922 | CCC_01488 | Cysteine desulfurase. | Cysteine desulfurase SufS subfamily. | 0.797 |
CCC_02922 | CCC_02924 | CCC_02922 | CCC_02924 | Cysteine desulfurase. | Iron-sulfur cluster assembly scaffold protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.995 |
CCC_02922 | CCC_03008 | CCC_02922 | CCC_03008 | Cysteine desulfurase. | Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ. | 0.972 |
CCC_02922 | CCC_03991 | CCC_02922 | CCC_03991 | Cysteine desulfurase. | Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ. | 0.972 |
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