STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCC_02011Nitrate/nitrite transporter. (429 aa)    
Predicted Functional Partners:
CCC_03426
2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.612
CCC_03427
2-oxo-hepta-3-ene-1 7-dioic acid hydratase.
  
    0.565
CCC_02010
Haloacid dehalogenase type II.
 
     0.564
CCC_02013
L(+)-tartrate dehydratase alpha subunit.
 
     0.546
CCC_03428
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
  
    0.529
CCC_03429
3 4-dihydroxyphenylacetate 2 3-dioxygenase.
  
    0.525
CCC_02014
Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family); Belongs to the LysR transcriptional regulatory family.
 
    0.493
CCC_02012
L(+)-tartrate dehydratase beta subunit.
       0.492
CCC_02485
Transcriptional regulator IclR family.
  
  
 0.483
CCC_03901
Nitrate/nitrite transporter.
  
 
 0.432
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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