STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCC_023202-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain. (215 aa)    
Predicted Functional Partners:
CCC_01268
Arsenate reductase.
   
 
 0.820
CCC_01857
Arsenate reductase.
   
 
 0.820
CCC_03021
Nitrogenase-associated protein NifO; Belongs to the ArsC family.
   
 
 0.820
CCC_03723
Arsenate reductase.
   
 
 0.820
CCC_02319
Pole remodelling regulatory diguanylate cyclase.
       0.803
CCC_03803
Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.680
CCC_00365
Flagellar basal-body rod protein FlgC.
    
   0.604
CCC_01877
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.604
ribB
3 4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.600
CCC_02318
Branched-chain amino acid ABC transporter amino acid-binding protein.
   
   0.561
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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