Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCC_02416Hypothetical protein. (281 aa)    
Predicted Functional Partners:
CCC_02417
Putative 3-phenylpropionic acid transporter.
       0.782
CCC_02415
Hypothetical protein.
       0.773
CCC_01199
Beta-galactosidase.
 
 
 0.695
CCC_02146
Beta-galactosidase.
 
 
 0.683
CCC_02068
Alpha-galactosidase.
 
 
 0.679
CCC_02413
Hydrogenase transcriptional regulatory protein HoxA.
       0.678
CCC_02414
Signal transduction histidine kinase HoxJ (hydrogenase regulation).
       0.678
CCC_01158
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
 
  
 0.604
CCC_02418
Hypothetical protein.
       0.576
CCC_03072
Hypothetical protein.
 
  
 0.569
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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