Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCC_02453Pentapeptide repeat family protein. (170 aa)    
Predicted Functional Partners:
CCC_01518
Signal transduction histidine kinase CheA.
 
  
 0.799
CCC_02946
Adenylate cyclase.
  
  
  0.723
CCC_02150
Adenylate cyclase.
  
  
  0.714
ribB
3 4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.673
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 
   0.517
CCC_01521
3-oxoacyl- acyl-carrier-protein synthase KASII.
 
 
 0.480
CCC_01520
3-oxoacyl- acyl-carrier-protein synthase KASII.
 
 
 0.471
CCC_03810
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
   0.466
CCC_01290
Serine phosphatase RsbU regulator of sigma subunit.
  
  
 0.462
atpA
ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.461
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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