Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CCC_02454SAM-dependent methyltransferase. (269 aa)    
Predicted Functional Partners:
CCC_02455
Putative beta (1-6) glucans synthase.
       0.778
CCC_02456
Putative lipoprotein.
       0.618
CCC_02457
DNA polymerase III alpha subunit.
     
 0.563
CCC_01520
3-oxoacyl- acyl-carrier-protein synthase KASII.
     
 0.559
CCC_01521
3-oxoacyl- acyl-carrier-protein synthase KASII.
     
 0.559
CCC_00532
LmbE-like protein.
 
     0.475
CCC_01745
Glycosyl transferase family 2.
    
 0.472
CCC_02458
Putative membrane protein.
       0.471
CCC_02460
Lipoprotein releasing system transmembrane protein LolE.
       0.462
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
       0.460
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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