STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCC_03053Competence protein F-like phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy. (242 aa)    
Predicted Functional Partners:
CCC_00289
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
 
 0.941
CCC_03674
DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.893
CCC_01981
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.864
CCC_00365
Flagellar basal-body rod protein FlgC.
   
   0.827
CCC_01877
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.827
CCC_00966
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein.
 
  
 0.824
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
    
 0.780
CCC_03892
Cyclohexadienyl dehydrogenase.
   
  
 0.764
CCC_03312
Flagellar protein FlbB.
   
    0.754
CCC_03779
Sensory box histidine kinase/response regulator.
  
  
 0.754
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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