Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCC_03072Hypothetical protein. (524 aa)    
Predicted Functional Partners:
CCC_00744
Hypothetical protein.
 
 
  0.737
CCC_01947
Putative calcium binding hemolysin protein.
  
  
  0.693
CCC_03249
Alkaline phosphatase.
  
     0.665
CCC_02540
Hypothetical protein.
  
     0.653
CCC_00878
Polysaccharide deacetylase family protein.
 
 
  0.631
CCC_03879
Flp pilus assembly protein CpaD.
  
     0.621
CCC_03071
Hypothetical protein.
       0.614
CCC_04187
Macrocin-O-methyltransferase domain protein.
  
   
 0.611
CCC_00275
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.608
CCC_01342
Tail length tape measure protein.
  
     0.601
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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