Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCC_03073NAD(FAD)-utilizing dehydrogenase. (401 aa)    
Predicted Functional Partners:
CCC_03075
Hypothetical protein.
       0.566
CCC_03074
Hypothetical protein.
       0.554
CCC_03072
Hypothetical protein.
       0.528
CCC_03744
Hypothetical protein; Belongs to the UPF0178 family.
 
     0.431
CCC_03071
Hypothetical protein.
       0.426
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.
  
 
  0.425
CCC_01212
Fructokinase.
  
    0.405
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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