Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
CCC_03345Hypothetical protein. (140 aa)    
Predicted Functional Partners:
ctaB-2
Heme O synthase protoheme IX farnesyltransferase COX10-CtaB; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
    0.796
CCC_03344
Arsenic efflux pump protein.
  
    0.785
ctaA
Heme A synthase cytochrome oxidase biogenesis protein Cox15-CtaA; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
 
    0.669
CCC_02141
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC putative copper metallochaperone.
 
  
 0.648
CCC_03341
Nucleotidyltransferase.
       0.625
CCC_03342
Protein of unknown function DUF86.
       0.625
CCC_03343
Oxidoreductase short-chain dehydrogenase/reductase family.
       0.625
CCC_03340
Protein YicC.
 
     0.533
CCC_02144
Cytochrome c oxidase (B(O/a)3-type) chain I.
 
  
 0.513
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.456
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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