Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCC_03397ABC-type multidrug transport system permease component. (266 aa)    
Predicted Functional Partners:
CCC_03398
Hypothetical protein.
 
 
 0.983
CCC_03400
Protein export cytoplasm protein SecA ATPase RNA helicase.
 
     0.837
CCC_03399
Protein export cytoplasm protein SecA ATPase RNA helicase.
       0.817
CCC_00527
ABC transporter ATP-binding protein.
  
 
 0.624
CCC_00716
ABC transporter multidrug efflux pump fused ATP-binding domains.
  
 
 0.624
CCC_03460
ABC transporter ATP-binding protein.
  
 
 0.624
CCC_04008
ABC transporter ATP-binding protein.
  
 
 0.624
CCC_02871
Nitrous oxide reductase maturation protein NosF (ATPase).
  
 
 0.619
CCC_01095
Putative reductase RutE in pyrimidine catabolism pathway.
  
  
 0.566
CCC_02591
Cobalamin biosynthesis protein BluB 5 6-dimethylbenzimidazole synthase flavin destructase family.
  
  
 0.566
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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