Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CCC_03422Radical SAM domain protein. (652 aa)    
Predicted Functional Partners:
CCC_03421
Hypothetical protein.
     
 0.779
CCC_04085
Fe-S oxidoreductase.
  
     0.752
CCC_03419
D D-heptose 7-phosphate kinase.
 
     0.608
CCC_03420
Hypothetical protein.
       0.601
CCC_04212
Hypothetical protein.
  
     0.595
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
   
 
 0.510
CCC_03708
Hypothetical protein.
  
 
  0.506
CCC_03414
Fe-S oxidoreductase.
 
    
0.500
CCC_02675
UDP-glucose 4-epimerase.
  
  
  0.459
CCC_00534
Putative integral membrane protein.
 
     0.414
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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