Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCC_03435TRAP transporter solute receptor unknown substrate 3. (351 aa)    
Predicted Functional Partners:
CCC_03433
TRAP dicarboxylate transporter DctM subunit unknown substrate 3.
 
 
 0.988
CCC_00667
TRAP dicarboxylate transporter DctM subunit unknown substrate 4.
 
 
 0.976
CCC_03434
TRAP dicarboxylate transporter DctQ subunit unknown substrate 3.
 
 
 0.975
CCC_02589
TRAP-type transport system periplasmic component predicted N-acetylneuraminate-binding protein.
  
  
  0.911
CCC_00668
TRAP transporter solute receptor unknown substrate 4.
  
  
  0.866
CCC_03266
TRAP-type C4-dicarboxylate transport system periplasmic component.
  
  
  0.799
CCC_00107
TRAP dicarboxylate transporter DctM subunit unknown substrate 6.
 
  
 0.787
CCC_00090
TRAP transporter 4TM/12TM fusion protein unknown substrate 1.
  
  
 0.766
CCC_00088
TRAP-type C4-dicarboxylate transport system periplasmic component.
  
  
 
0.764
CCC_02472
TRAP dicarboxylate transporter DctM subunit unknown substrate 6.
 
  
 0.709
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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