Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCC_03440Homoprotocatechuate degradative operon repressor. (134 aa)    
Predicted Functional Partners:
CCC_03429
3 4-dihydroxyphenylacetate 2 3-dioxygenase.
 
  
 0.825
CCC_03428
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
  
   
 0.753
CCC_03427
2-oxo-hepta-3-ene-1 7-dioic acid hydratase.
  
     0.690
CCC_03439
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.596
CCC_03138
Oxygen-insensitive NADPH nitroreductase.
 
 
 0.492
CCC_03438
Protein GlcG.
     
 0.470
cysC
Sulfate adenylyltransferase subunit 1 / Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.468
CCC_02466
Nitrilotriacetate monooxygenase component B.
 
  
 0.455
CCC_00147
Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
     
  0.425
CCC_02690
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 
 0.421
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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