Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CCC_03948 | CCC_03949 | CCC_03948 | CCC_03949 | Hypothetical protein; PlcB ORFX ORFP ORFB ORFA ldh; Belongs to the UPF0145 family. | Molybdopterin biosynthesis molybdochelatase MogA. | 0.565 |
CCC_03948 | flgH | CCC_03948 | CCC_03305 | Hypothetical protein; PlcB ORFX ORFP ORFB ORFA ldh; Belongs to the UPF0145 family. | Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.672 |
CCC_03948 | rpsT | CCC_03948 | CCC_00324 | Hypothetical protein; PlcB ORFX ORFP ORFB ORFA ldh; Belongs to the UPF0145 family. | SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA. | 0.482 |
CCC_03949 | CCC_03948 | CCC_03949 | CCC_03948 | Molybdopterin biosynthesis molybdochelatase MogA. | Hypothetical protein; PlcB ORFX ORFP ORFB ORFA ldh; Belongs to the UPF0145 family. | 0.565 |
flgH | CCC_03948 | CCC_03305 | CCC_03948 | Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | Hypothetical protein; PlcB ORFX ORFP ORFB ORFA ldh; Belongs to the UPF0145 family. | 0.672 |
rpsT | CCC_03948 | CCC_00324 | CCC_03948 | SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA. | Hypothetical protein; PlcB ORFX ORFP ORFB ORFA ldh; Belongs to the UPF0145 family. | 0.482 |