Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCC_04052Hypothetical protein. (108 aa)    
Predicted Functional Partners:
CCC_04050
Branched-chain amino acid transport ATP-binding protein LivG.
 
     0.913
CCC_04049
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
     0.903
CCC_04048
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
     0.855
CCC_04051
Branched-chain amino acid transport ATP-binding protein LivF.
     0.848
CCC_03716
High-affinity leucine-specific transport system periplasmic binding protein LivK.
 
     0.707
CCC_04053
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
       0.623
CCC_01174
Hypothetical protein.
  
     0.565
CCC_03891
Hypothetical protein.
  
     0.548
CCC_02714
ABC-type uncharacterized transport system periplasmic component.
 
     0.523
CCC_03552
Hypothetical protein.
  
     0.515
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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