Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCC_04099ABC transporter ATP-binding protein. (247 aa)    
Predicted Functional Partners:
CCC_04103
O-antigen export system permease protein RfbD.
 
 0.987
CCC_04101
O-antigen export system permease protein RfbD.
  
 0.973
CCC_04100
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 0.798
CCC_03642
ABC transporter ATP-binding protein YvcR.
  
     0.690
CCC_00882
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.682
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
     0.670
CCC_01745
Glycosyl transferase family 2.
 
 
 0.659
CCC_04008
ABC transporter ATP-binding protein.
  
  
  0.645
CCC_03053
Competence protein F-like phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy.
   
    0.625
ftsE
Cell division transporter ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
     0.623
Your Current Organism:
Magnetospirillum magnetotacticum
NCBI taxonomy Id: 272627
Other names: M. magnetotacticum MS-1, Magnetospirillum magnetotacticum MS-1, Magnetospirillum magnetotacticum str. MS-1, Magnetospirillum magnetotacticum strain MS-1, Magnetospirillum sp. MS-1
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